138

Bioremediation for Sustainable Environmental Cleanup

Bandhyopadhyay, K., D. Das and B. R. Maiti. 1999. Solid matrix characterization of immobilized Pseudomonas

putida MTCC 1194 used for phenol degradation. Appl. Microbiol. Biotechnol. 51(6): 891–895.

Bang, S. W. 1997. Molecular analysis of p-nitrophenol degradation by Pseudomonas sp. strain ENV2030. Ph.D.

Thesis, Department of Environmental Sciences, Rutgers University, New Brunswick, New Jersey.

Barker, J. L. and J. W. Frost. 2001. Microbial synthesis of p‐hydroxybenzoic acid from glucose. Biotechnol. Bioeng.

76(4): 376–390.

Bhushan, B., A. Chauhan, S. K. Samanta and R. K. Jain. 2000. Kinetics of biodegradation of p-nitrophenol by

different bacteria. Biochem. Biophys. Res. Commun. 274(3): 626–630.

Bigley, A. N. and F. M. Raushel. 2013. Catalytic mechanisms for phosphotriesterases. Biochim.

Biophys. Acta Proteins Proteom. 1834(1): 443–453.

Biot-Pelletier, D. and V. J. Martin. 2014. Evolutionary engineering by genome shuffling. Appl. Microbiol. Biotechnol.

98(9): 3877–3887.

Bojanovič, K., I. D’Arrigo and K. S. Long. 2017. Global transcriptional responses to osmotic. Appl. Environ.

Microbiol. 83(7): e03236–16.

Brämer, C. O. and A. Steinbüchel. 2001. The methylcitric acid pathway in Ralstonia eutropha: new genes identified

involved in propionate metabolism The GenBank accession numbers for the nucleotide sequences of the prp

gene cluster are AF325554 and AF331923. Microbiol. 147(8): 2203–2214.

Bueno, M., M. F. Fillat, R. J. Strasser, R. Maldonado-Rodriguez, N. Marina, H. Smienk, C. Gómez-Moreno and

F. Barja. 2004. Effects of lindane on the photosynthetic apparatus of the Cyanobacterium anabaena. Environ.

Sci. Pollut. Res. Int. 11(2): 98–106.

Bujdoš, D., B. Popelářová, D. C. Volke, P. I. Nikel, N. Sonnenschein and P. Dvořák. 2023. Engineering of

Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of

pyruvate explained by an upgraded metabolic model. Metabolic Eng. 75: 29–46.

Caldwell, B. J. and C. E. Bell. 2019. Structure and mechanism of the Red recombination system of bacteriophage λ.

Prog. Biophys. Mol. Biol. 147: 33–46.

Carvalho, F. D., I. Machado, M. S. Martínez, A. Soares and L. Guilhermino. 2003. Use of atropine-treated Daphnia

magna survival for detection of environmental contamination by acetylcholinesterase inhibitors. Ecotoxicol

Environ Saf. 54(1): 43–46.

Cha, D., H. S. Ha and S. K. Lee. 2020. Metabolic engineering of Pseudomonas putida for the production of various

types of short-chain-length polyhydroxyalkanoates from levulinic acid. Bioresour. Technol. 309: 123332.

Chagué, V., Y. Elad, R. Barakat, P. Tudzynski and A. Sharon. 2002. Ethylene biosynthesis in Botrytis cinerea. FEMS

Microbiol. Ecol. 40(2): 143–149.

Chaudhry, G. R., A. N. Ali and W. B. Wheeler. 1988. Isolation of a methyl parathion-degrading Pseudomonas sp.

that possesses DNA homologous to the opd gene from a Flavobacterium sp. Appl. Environ. Microbiol. 54(2):

288–93.

Chaurasia, A. K., T. K. Adhya and S. K. Apte. 2013. Engineering bacteria for bioremediation of persistent

organochlorine pesticide lindane (γ-hexachlorocyclohexane). Bioresour. Technol. 149: 439–445.

Chavarría, M., P. I. Nikel, D. Pérez-Pantoja and V. de Lorenzo. 2013. The Entner–doudoroff pathway empowers

Pseudomonas putida KT 2440 with a high tolerance to oxidative stress. Environ. Microbiol. 15(6): 1772–1785.

Chen, S., Y. H. Dong, C. Chang, Y. Deng, X. F. Zhang, G. Zhong, H. Song, M. Hu and L. H. Zhang. 2013.

Characterization of a novel cyfluthrin-degrading bacterial strain Brevibacterium aureum and its biochemical

degradation pathway. Bioresour. Technol. 132: 16–23.

Cook, A. M. and R. Huetter. 1981. s-Triazines as nitrogen sources for bacteria. J. Agric. Food Chem. 29(6): 1135–

1143.

Cuenca, M. D. S., C. Molina-Santiago, M. R. Gómez-García and J. L. Ramos. 2016. A Pseudomonas putida double

mutant deficient in butanol assimilation: a promising step for engineering a biological biofuel production

platform. FEMS Microbiol. Lett. 363(5): fnw018.

Cullington, J. E. and A. Walker. 1999. Rapid biodegradation of diuron and other phenylurea herbicides by a soil

bacterium. Soil Biol. Biochem. 31(5): 677–686.

Dai, M. and S. D. Copley. 2004. Genome shuffling improves degradation of the anthropogenic pesticide

pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723. Appl. Environ. Microbiol. 70(4): 2391–

2397.

DeFrank, J. J. 1991. Organophosphorus cholinesterase inhibitors: detoxification by microbial enzymes. Applications

of Enzyme Biotechnology. Springer, Boston, MA.

Dejonghe, W., J. Goris, S. El-Fantroussi, M. Höfte, P. DeVos, W. Verstraete and E. M. Top. 2000. Effect of

dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on

bacterial community structure in two different soil horizons. Appl. Environ. Microbiol. 66(8): 3297–3304.